STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1633Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: ckl:CKL_0067 hypothetical protein. (210 aa)    
Predicted Functional Partners:
Cphy_1635
KEGG: bca:BCE_1989 membrane protein, putative.
 
     0.923
Cphy_1634
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bld:BLi00349 ABC-2 type transport system ATP-binding protein.
 
     0.899
Cphy_0953
KEGG: cdf:CD0593 hypothetical protein.
  
     0.479
Cphy_0279
KEGG: cbe:Cbei_4038 hypothetical protein.
  
     0.473
Cphy_0994
KEGG: dsy:DSY1050 hypothetical protein.
  
     0.463
Cphy_1141
KEGG: amt:Amet_3459 hypothetical protein.
  
     0.444
Cphy_3621
PFAM: regulatory protein TetR; KEGG: cbh:CLC_1236 transcriptional regulator, TetR family.
  
     0.435
Cphy_1636
PFAM: chemotaxis sensory transducer; KEGG: mag:amb3192 methyl-accepting chemotaxis protein.
   
   0.432
Cphy_0280
KEGG: cac:CAC3435 hypothetical protein.
  
     0.423
Cphy_1632
KEGG: ctc:CTC02460 ATP-dependent DNA helicase rep.
       0.421
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.