STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1645Hypothetical protein; KEGG: cdf:CD3350 putative glycosyl transferase. (416 aa)    
Predicted Functional Partners:
Cphy_2002
PFAM: YCII-related; KEGG: cpf:CPF_0987 hypothetical protein.
  
     0.510
Cphy_1778
KEGG: dsy:DSY1202 hypothetical protein.
  
     0.507
Cphy_1403
PFAM: glycosyl hydrolase BNR repeat-containing protein; KEGG: oih:OB0252 oxidoreductase.
  
     0.476
Cphy_3003
PFAM: GCN5-related N-acetyltransferase; KEGG: drm:Dred_2229 hypothetical protein.
  
     0.476
Cphy_1466
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: cbe:Cbei_1804 integral membrane sensor signal transduction histidine kinase.
  
 
   0.466
Cphy_1201
KEGG: spd:SPD_0319 undecaprenylphosphate glucosephosphotransferase Cps2E; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
  
  
 0.449
Cphy_3542
KEGG: dsy:DSY3322 hypothetical protein; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
  
  
 0.449
Cphy_3119
KEGG: cbo:CBO2129 hypothetical protein.
  
     0.428
Cphy_3237
KEGG: btk:BT9727_4626 hypothetical protein.
  
 
   0.423
Cphy_0323
PFAM: glycosyl transferase family 2; KEGG: cdf:CD3350 putative glycosyl transferase.
  
     0.417
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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