STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1998KEGG: dsy:DSY1863 hypothetical protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase. (333 aa)    
Predicted Functional Partners:
Cphy_1997
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsy:DSY1864 hypothetical protein.
 0.997
Cphy_1996
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsy:DSY1865 hypothetical protein.
 
 0.996
Cphy_2000
PFAM: extracellular solute-binding protein family 5; KEGG: dsy:DSY1861 hypothetical protein.
 
 
 0.989
Cphy_3106
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: spi:MGAS10750_Spy0248 oligopeptide transport system permease protein OppC.
 0.989
Cphy_1999
KEGG: dsy:DSY1862 hypothetical protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase.
 
  
 
0.980
Cphy_0433
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oih:OB3067 oligopeptide ABC transporter permease.
 
 0.977
Cphy_3108
PFAM: extracellular solute-binding protein family 5; KEGG: spi:MGAS10750_Spy0246 oligopeptide-binding protein OppA.
 
 
 0.954
Cphy_0807
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tte:TTE2524 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.932
Cphy_3104
PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: spi:MGAS10750_Spy0250 oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
 
 
 
0.932
Cphy_0814
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpr:CPR_2256 oligopeptide ABC transporter, permease component.
 
 0.912
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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