STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3062PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: tte:TTE0576 subtilisin-like serine protease; Belongs to the peptidase S8 family. (327 aa)    
Predicted Functional Partners:
Cphy_3538
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cpe:CPE2561 probable Ser-type protease.
  
  
 0.638
Cphy_1571
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cac:CAC3245 subtilisin like protease (two fused domains).
  
  
 0.614
Cphy_1575
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cpe:CPE2561 probable Ser-type protease.
  
  
 0.604
Cphy_1576
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cpr:CPR_2070 subtilase family protein.
  
  
 0.603
Cphy_0138
Protein serine/threonine phosphatase; KEGG: cth:Cthe_2681 serine phosphatase; PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein.
  
    0.589
Cphy_2520
KEGG: amt:Amet_2496 sporulation stage III, protein AE.
  
     0.574
Cphy_1572
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cpf:CPF_2368 subtilase family protein.
  
  
 0.521
Cphy_1573
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: ctc:CTC02345 putative serine-type protease.
  
  
 0.516
Cphy_1574
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: ctc:CTC02345 putative serine-type protease.
  
  
 0.489
Cphy_3794
PFAM: Peptidoglycan-binding LysM; KEGG: cth:Cthe_2402 peptidoglycan-binding LysM.
  
  
 0.476
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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