STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3576Hypothetical protein; KEGG: lin:lin2245 similar to ABC transporter (membrane protein). (365 aa)    
Predicted Functional Partners:
Cphy_3577
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lmf:LMOf2365_2171 ABC transporter, ATP-binding protein.
  
  
 0.811
Cphy_3579
Hypothetical protein; KEGG: abu:Abu_1032 peptidase, M50 family.
     
 0.691
Cphy_3578
PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: bay:RBAM_037310 hypothetical protein.
       0.688
Cphy_1554
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: bcy:Bcer98_3869 helix-turn-helix domain protein.
  
     0.643
ddl
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
 
     0.555
Cphy_3291
PFAM: VanZ family protein; KEGG: gtn:GTNG_0437 hypothetical protein.
  
     0.497
Cphy_2972
KEGG: bha:BH3534 hypothetical protein.
  
     0.492
Cphy_3574
PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mba:Mbar_A3165 Fe-S oxidoreductase.
       0.469
Cphy_3575
Hypothetical protein.
       0.469
Cphy_2971
TIGRFAM: phage uncharacterized protein; KEGG: cbf:CLI_2421 hypothetical protein.
  
     0.410
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.