STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFU45159.1Transmembrane protein. (120 aa)    
Predicted Functional Partners:
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
  
    0.822
era
GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
  
    0.813
AFU47626.1
Putative CheW protein; COG0835 Chemotaxis signal transduction protein.
  
     0.762
AFU44461.1
Hypothetical protein.
  
     0.761
AFU46633.1
Hypothetical protein.
  
     0.751
AFU44697.1
Hypothetical protein; COG0699 Predicted GTPases (dynamin-related).
  
     0.746
AFU47624.1
CheA signal transduction histidine kinase; COG0643 Chemotaxis protein histidine kinase and related kinases.
  
   
 0.722
AFU45402.1
Putative signal peptide protein.
  
     0.720
AFU44579.1
COG3168 Tfp pilus assembly protein PilP.
  
   
 0.704
AFU44578.1
COG3167 Tfp pilus assembly protein PilO.
  
   
 0.703
Your Current Organism:
Acidovorax sp. KKS102
NCBI taxonomy Id: 358220
Other names: A. sp. KKS102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.