STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ylbJConserved hypothetical membrane protein. (410 aa)    
Predicted Functional Partners:
yqfD
Putative stage IV sporulation protein.
 
   
 0.834
yqfC
Conserved hypothetical protein.
 
   
 0.833
spoIIR
Stage II sporulation protein R.
  
   
 0.818
spoIIID
Stage III sporulation protein D.
  
  
 0.817
spoIIGA
Sporulation sigma-E factor processing peptidase.
  
   
 0.812
yabP
Conserved hypothetical protein.
 
   
 0.791
BAH43303.1
Stage III sporulation protein AE.
  
    0.779
spoIVA
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
   
 0.776
BAH43302.1
Stage III sporulation protein AD.
  
     0.773
spoIIM
Stage II sporulation protein M.
  
   
 0.773
Your Current Organism:
Brevibacillus brevis
NCBI taxonomy Id: 358681
Other names: B. brevis NBRC 100599, Brevibacillus brevis NBRC 100599, Brevibacillus brevis str. NBRC 100599, Brevibacillus brevis strain NBRC 100599
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.