Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BAH42740.1 | BAH43548.1 | BBR47_17630 | BBR47_25710 | Putative peptidase. | Conserved hypothetical protein. | 0.900 |
BAH42740.1 | BAH45844.1 | BBR47_17630 | BBR47_48670 | Putative peptidase. | Probable aminotransferase. | 0.904 |
BAH42740.1 | dapC | BBR47_17630 | BBR47_39100 | Putative peptidase. | Putative acetyldiaminopimelate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.908 |
BAH42740.1 | dapE | BBR47_17630 | BBR47_39090 | Putative peptidase. | Putative N-acetyl-diaminopimelate deacetylate; Catalyzes the conversion of N-acetyl-diaminopimelate to diaminopimelate and acetate. | 0.901 |
BAH42740.1 | dapF | BBR47_17630 | BBR47_41170 | Putative peptidase. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.916 |
BAH42740.1 | dapF-2 | BBR47_17630 | BBR47_28630 | Putative peptidase. | Probable diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.916 |
BAH42740.1 | ytjP | BBR47_17630 | BBR47_43670 | Putative peptidase. | Putative peptidase. | 0.908 |
BAH43548.1 | BAH42740.1 | BBR47_25710 | BBR47_17630 | Conserved hypothetical protein. | Putative peptidase. | 0.900 |
BAH43548.1 | BAH45844.1 | BBR47_25710 | BBR47_48670 | Conserved hypothetical protein. | Probable aminotransferase. | 0.904 |
BAH43548.1 | dapC | BBR47_25710 | BBR47_39100 | Conserved hypothetical protein. | Putative acetyldiaminopimelate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.908 |
BAH43548.1 | dapE | BBR47_25710 | BBR47_39090 | Conserved hypothetical protein. | Putative N-acetyl-diaminopimelate deacetylate; Catalyzes the conversion of N-acetyl-diaminopimelate to diaminopimelate and acetate. | 0.901 |
BAH43548.1 | dapF | BBR47_25710 | BBR47_41170 | Conserved hypothetical protein. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.910 |
BAH43548.1 | dapF-2 | BBR47_25710 | BBR47_28630 | Conserved hypothetical protein. | Probable diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.910 |
BAH43548.1 | ytjP | BBR47_25710 | BBR47_43670 | Conserved hypothetical protein. | Putative peptidase. | 0.900 |
BAH44885.1 | dapC | BBR47_39080 | BBR47_39100 | Hypothetical protein. | Putative acetyldiaminopimelate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.414 |
BAH44885.1 | dapD | BBR47_39080 | BBR47_39110 | Hypothetical protein. | Putative 2,3,4,5-tetrahydropyridine-2-carboxylate N-acetyltransferase; Catalyzes the transfer of an acetyl group from acetyl-CoA to tetrahydrodipicolinate. | 0.402 |
BAH44885.1 | dapE | BBR47_39080 | BBR47_39090 | Hypothetical protein. | Putative N-acetyl-diaminopimelate deacetylate; Catalyzes the conversion of N-acetyl-diaminopimelate to diaminopimelate and acetate. | 0.414 |
BAH45844.1 | BAH42740.1 | BBR47_48670 | BBR47_17630 | Probable aminotransferase. | Putative peptidase. | 0.904 |
BAH45844.1 | BAH43548.1 | BBR47_48670 | BBR47_25710 | Probable aminotransferase. | Conserved hypothetical protein. | 0.904 |
BAH45844.1 | dapD | BBR47_48670 | BBR47_39110 | Probable aminotransferase. | Putative 2,3,4,5-tetrahydropyridine-2-carboxylate N-acetyltransferase; Catalyzes the transfer of an acetyl group from acetyl-CoA to tetrahydrodipicolinate. | 0.915 |
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