Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BAH45221.1 | BAH46169.1 | BBR47_42440 | BBR47_51920 | Conserved hypothetical protein. | Putative argininosuccinate lyase. | 0.424 |
BAH45221.1 | argB | BBR47_42440 | BBR47_53020 | Conserved hypothetical protein. | Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily. | 0.633 |
BAH45221.1 | argC | BBR47_42440 | BBR47_53030 | Conserved hypothetical protein. | N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. | 0.527 |
BAH45221.1 | argF | BBR47_42440 | BBR47_52980 | Conserved hypothetical protein. | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family. | 0.882 |
BAH45221.1 | argG | BBR47_42440 | BBR47_52920 | Conserved hypothetical protein. | Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. | 0.939 |
BAH45221.1 | argH | BBR47_42440 | BBR47_52910 | Conserved hypothetical protein. | Argininosuccinate lyase. | 0.424 |
BAH45221.1 | argH-2 | BBR47_42440 | BBR47_45250 | Conserved hypothetical protein. | Putative argininosuccinate lyase. | 0.424 |
BAH45221.1 | carB | BBR47_42440 | BBR47_52990 | Conserved hypothetical protein. | Arginine-specific carbamoyl-phosphate synthase large chain. | 0.900 |
BAH45221.1 | purA | BBR47_42440 | BBR47_59170 | Conserved hypothetical protein. | Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family. | 0.434 |
BAH45221.1 | pyrAB | BBR47_42440 | BBR47_37710 | Conserved hypothetical protein. | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. | 0.900 |
BAH46169.1 | BAH45221.1 | BBR47_51920 | BBR47_42440 | Putative argininosuccinate lyase. | Conserved hypothetical protein. | 0.424 |
BAH46169.1 | argB | BBR47_51920 | BBR47_53020 | Putative argininosuccinate lyase. | Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily. | 0.899 |
BAH46169.1 | argC | BBR47_51920 | BBR47_53030 | Putative argininosuccinate lyase. | N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. | 0.881 |
BAH46169.1 | argF | BBR47_51920 | BBR47_52980 | Putative argininosuccinate lyase. | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family. | 0.886 |
BAH46169.1 | argG | BBR47_51920 | BBR47_52920 | Putative argininosuccinate lyase. | Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. | 0.995 |
BAH46169.1 | argH | BBR47_51920 | BBR47_52910 | Putative argininosuccinate lyase. | Argininosuccinate lyase. | 0.928 |
BAH46169.1 | argH-2 | BBR47_51920 | BBR47_45250 | Putative argininosuccinate lyase. | Putative argininosuccinate lyase. | 0.927 |
BAH46169.1 | carB | BBR47_51920 | BBR47_52990 | Putative argininosuccinate lyase. | Arginine-specific carbamoyl-phosphate synthase large chain. | 0.443 |
BAH46169.1 | purA | BBR47_51920 | BBR47_59170 | Putative argininosuccinate lyase. | Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family. | 0.401 |
BAH46169.1 | pyrAB | BBR47_51920 | BBR47_37710 | Putative argininosuccinate lyase. | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. | 0.443 |
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