STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DF19_00520alpha-L-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (277 aa)    
Predicted Functional Partners:
DF19_00510
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.771
DF19_00515
Ligand-binding protein SH3; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.771
DF19_12105
Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.716
DF19_28730
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.711
DF19_28640
alpha-L-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.704
DF19_28725
Poly(3-hydroxybutyrate) depolymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.697
DF19_00505
2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.696
DF19_13700
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.692
DF19_11855
alpha-L-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.676
DF19_12115
alpha-L-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.661
Your Current Organism:
Streptomyces olindensis
NCBI taxonomy Id: 358823
Other names: S. olindensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.