STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DF19_04040Agmatine deiminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (345 aa)    
Predicted Functional Partners:
DF19_38200
Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.982
DF19_38215
Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.979
DF19_09210
Agmatinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.918
DF19_04045
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.875
DF19_05395
Carbon-nitrogen hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.864
DF19_05875
Arginine decarboxylase; Biodegradative; catalyzes the formation of agmatine from arginine; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.833
DF19_30390
Ornithine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.833
DF19_32290
Ornithine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.833
DF19_04035
Urease subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.795
DF19_04050
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.707
Your Current Organism:
Streptomyces olindensis
NCBI taxonomy Id: 358823
Other names: S. olindensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.