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CN09_00085 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_00085" - Phosphate ABC transporter substrate-binding protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_00085Phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (259 aa)    
Predicted Functional Partners:
CN09_00090
Ornithine cyclodeaminase; Derived by automated computational analysis using gene prediction method- Protein Homology (334 aa)
 
          0.936
CN09_00080
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (207 aa)
 
          0.767
CN09_00075
Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (211 aa)
 
          0.766
CN09_00070
Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (312 aa)
 
          0.764
CN09_30585
Regulatory protein; Derived by automated computational analysis using gene prediction method- Protein Homology (786 aa)
         
  0.724
CN09_23555
Ferredoxin; Derived by automated computational analysis using gene prediction method- Protein Homology (972 aa)
 
          0.643
CN09_18330
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (333 aa)
   
          0.640
CN09_00095
ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (295 aa)
 
          0.619
CN09_12125
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (71 aa)
   
          0.562
CN09_00115
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (266 aa)
 
          0.540
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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