STRINGSTRING
CN09_00170 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_00170" - XRE family transcriptional regulator in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_00170XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (91 aa)    
Predicted Functional Partners:
CN09_00165
Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (410 aa)
 
 
 
  0.967
CN09_08370
Acyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (380 aa)
 
     
  0.629
CN09_00180
Dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (336 aa)
              0.522
CN09_00175
Galactarate dehydratase; Derived by automated computational analysis using gene prediction method- Protein Homology (507 aa)
              0.497
CN09_03180
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (111 aa)
   
          0.459
CN09_22745
Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (613 aa)
 
 
 
  0.442
CN09_00205
D-mannonate oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (378 aa)
 
     
  0.441
CN09_23720
Succinoglycan biosynthesis protein exop; Derived by automated computational analysis using gene prediction method- Protein Homology (495 aa)
 
          0.425
CN09_09030
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (264 aa)
 
          0.418
CN09_26990
Type III secretion protein; Derived by automated computational analysis using gene prediction method- Protein Homology (336 aa)
 
          0.413
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (8%) [HD]