STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_00180Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology (336 aa)    
Predicted Functional Partners:
CN09_00205
D-mannonate oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology
   
 0.970
CN09_00175
Galactarate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.927
CN09_01235
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.764
CN09_03380
2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.723
CN09_00185
Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.678
CN09_00210
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
 
 0.633
CN09_00200
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.591
CN09_23790
Galactarate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.550
CN09_00195
Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.544
CN09_23770
Abc transporter; Belongs to the binding-protein-dependent transport system permease family
       0.532
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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