CN09_00195 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_00195

Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology (217 aa)

Predicted Functional Partners:

CN09_00190

0.971

CN09_00185

0.955

CN09_00200

0.895

CN09_00205

0.863

CN09_05245

0.812

CN09_31280

0.809

CN09_05260

0.753

CN09_31295

0.747

CN09_31245

0.736

CN09_21640

0.728

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

page 1 of 4

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_00185	CN09_00190	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	Phosphate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.894
CN09_00185	CN09_00195	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.955
CN09_00185	CN09_00200	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.976
CN09_00185	CN09_00205	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	D-mannonate oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.770
CN09_00185	CN09_05245	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	Amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.633
CN09_00185	CN09_21640	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.429
CN09_00185	CN09_31245	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.447
CN09_00185	CN09_31280	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	Amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.581
CN09_00190	CN09_00185	Phosphate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.894
CN09_00190	CN09_00195	Phosphate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.971
CN09_00190	CN09_00200	Phosphate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.970
CN09_00190	CN09_00205	Phosphate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	D-mannonate oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.856
CN09_00190	CN09_05260	Phosphate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family	0.499
CN09_00190	CN09_31295	Phosphate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.642
CN09_00195	CN09_00185	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.955
CN09_00195	CN09_00190	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Phosphate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.971
CN09_00195	CN09_00200	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.895
CN09_00195	CN09_00205	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	D-mannonate oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.863
CN09_00195	CN09_05245	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.812
CN09_00195	CN09_05260	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family	0.753