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CN09_00225 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_00225" - ABC transporter permease in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
CN09_00225ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family (314 aa)    
Predicted Functional Partners:
CN09_00230
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (487 aa)
   
  0.991
CN09_00220
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family (316 aa)
          0.989
CN09_00235
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (338 aa)
 
     
  0.972
CN09_00215
Gluconolactonase; Derived by automated computational analysis using gene prediction method- Protein Homology (306 aa)
 
          0.925
CN09_00240
ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology (487 aa)
 
          0.892
CN09_00245
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method- Protein Homology (255 aa)
 
          0.887
CN09_23285
Gluconolactonase; Derived by automated computational analysis using gene prediction method- Protein Homology (296 aa)
 
          0.713
CN09_32815
Branched-chain amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family (337 aa)
   
          0.529
CN09_24315
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family (348 aa)
   
          0.515
CN09_20955
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family (326 aa)
   
          0.448
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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