CN09_00280 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_00280

Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology (504 aa)

Predicted Functional Partners:

CN09_00295

0.994

CN09_00290

0.986

CN09_00300

0.961

CN09_00305

0.936

CN09_00285

0.875

CN09_00310

0.828

CN09_24270

0.603

CN09_24295

0.474

CN09_24980

0.438

CN09_26440

0.434

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

page 1 of 4

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_00280	CN09_00285	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily	0.875
CN09_00280	CN09_00290	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	Nickel ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.986
CN09_00280	CN09_00295	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.994
CN09_00280	CN09_00300	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	Proline iminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S33 family	0.961
CN09_00280	CN09_00305	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.936
CN09_00280	CN09_00310	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	Amino acid amidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S33 family	0.828
CN09_00280	CN09_24270	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family	0.603
CN09_00280	CN09_24295	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.474
CN09_00280	CN09_24980	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.438
CN09_00280	CN09_26440	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.434
CN09_00285	CN09_00280	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.875
CN09_00285	CN09_00290	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily	Nickel ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.889
CN09_00285	CN09_00295	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.888
CN09_00285	CN09_00300	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily	Proline iminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S33 family	0.692
CN09_00285	CN09_00305	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.567
CN09_00285	CN09_00310	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily	Amino acid amidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S33 family	0.484
CN09_00290	CN09_00280	Nickel ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.986
CN09_00290	CN09_00285	Nickel ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily	0.889
CN09_00290	CN09_00295	Nickel ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.990
CN09_00290	CN09_00300	Nickel ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Proline iminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S33 family	0.935