STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_00280Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology (504 aa)    
Predicted Functional Partners:
CN09_00295
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 0.994
CN09_00290
Nickel ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
 0.987
CN09_00300
Proline iminopeptidase; Belongs to the peptidase S33 family
 
     0.961
CN09_00305
LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.936
CN09_00285
Abc transporter atp-binding protein; Belongs to the ABC transporter superfamily
  
  
 0.875
CN09_00310
Amino acid amidase; Belongs to the peptidase S33 family
 
     0.830
cysA
Sulfate abc transporter atp-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system
  
 
  0.762
lptB
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
    
  0.617
CN09_06045
Sugar abc transporter permease; Transport permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology
    
 0.609
CN09_24270
Abc transporter substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family
 
   
 0.602
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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