CN09_00535 protein (Agrobacterium rhizogenes)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

CN09_00535

Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (83 aa)

Predicted Functional Partners:

CN09_19600

0.756

CN09_33745

0.745

CN09_33755

0.725

CN09_19445

0.711

CN09_33750

0.711

CN09_19605

0.704

CN09_33740

0.701

CN09_19595

0.699

CN09_18575

0.676

repC

0.675

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_00535	CN09_18575	CN09_00535	CN09_18575	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.676
CN09_00535	CN09_19445	CN09_00535	CN09_19445	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.711
CN09_00535	CN09_19595	CN09_00535	CN09_19595	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Conjugal transfer system TraA; oriT nicking enzyme; Derived by automated computational analysis using gene prediction method- Protein Homology	0.699
CN09_00535	CN09_19600	CN09_00535	CN09_19600	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Conjugal transfer protein TraC; Derived by automated computational analysis using gene prediction method- Protein Homology	0.756
CN09_00535	CN09_19605	CN09_00535	CN09_19605	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Conjugal transfer protein TraD; Derived by automated computational analysis using gene prediction method- Protein Homology	0.704
CN09_00535	CN09_33740	CN09_00535	CN09_33740	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Conjugal transfer system TraA; oriT nicking enzyme; Derived by automated computational analysis using gene prediction method- Protein Homology	0.701
CN09_00535	CN09_33745	CN09_00535	CN09_33745	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Conjugal transfer protein TraC; Derived by automated computational analysis using gene prediction method- Protein Homology	0.745
CN09_00535	CN09_33750	CN09_00535	CN09_33750	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Conjugal transfer protein TraD; Derived by automated computational analysis using gene prediction method- Protein Homology	0.711
CN09_00535	CN09_33755	CN09_00535	CN09_33755	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Conjugal transfer protein TraG; Derived by automated computational analysis using gene prediction method- Protein Homology	0.725
CN09_00535	repC	CN09_00535	CN09_19480	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Putative replication protein C; This protein is coded by a hairy root Ri plasmid, it is probably involved in its replication	0.675
CN09_18575	CN09_00535	CN09_18575	CN09_00535	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.676
CN09_18575	CN09_19595	CN09_18575	CN09_19595	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Conjugal transfer system TraA; oriT nicking enzyme; Derived by automated computational analysis using gene prediction method- Protein Homology	0.458
CN09_18575	CN09_19600	CN09_18575	CN09_19600	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Conjugal transfer protein TraC; Derived by automated computational analysis using gene prediction method- Protein Homology	0.573
CN09_18575	CN09_19605	CN09_18575	CN09_19605	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Conjugal transfer protein TraD; Derived by automated computational analysis using gene prediction method- Protein Homology	0.542
CN09_18575	CN09_33740	CN09_18575	CN09_33740	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Conjugal transfer system TraA; oriT nicking enzyme; Derived by automated computational analysis using gene prediction method- Protein Homology	0.463
CN09_18575	CN09_33745	CN09_18575	CN09_33745	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Conjugal transfer protein TraC; Derived by automated computational analysis using gene prediction method- Protein Homology	0.578
CN09_18575	CN09_33750	CN09_18575	CN09_33750	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Conjugal transfer protein TraD; Derived by automated computational analysis using gene prediction method- Protein Homology	0.550
CN09_18575	CN09_33755	CN09_18575	CN09_33755	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Conjugal transfer protein TraG; Derived by automated computational analysis using gene prediction method- Protein Homology	0.403
CN09_18575	repC	CN09_18575	CN09_19480	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Putative replication protein C; This protein is coded by a hairy root Ri plasmid, it is probably involved in its replication	0.657
CN09_19445	CN09_00535	CN09_19445	CN09_00535	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.711

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