CN09_00595 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_00595

Spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily (349 aa)

Predicted Functional Partners:

CN09_00600

0.968

CN09_00605

0.965

CN09_00610

0.950

CN09_00590

0.884

CN09_18870

0.785

CN09_23100

0.752

CN09_31955

0.743

CN09_00585

0.742

CN09_31485

0.740

CN09_01065

0.719

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

page 1 of 4

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_00585	CN09_00590	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	Isochorismatase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.779
CN09_00585	CN09_00595	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	Spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily	0.742
CN09_00585	CN09_00600	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.723
CN09_00585	CN09_00605	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.752
CN09_00585	CN09_00610	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	Spermidine/putrescine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.778
CN09_00590	CN09_00585	Isochorismatase; Derived by automated computational analysis using gene prediction method: Protein Homology	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.779
CN09_00590	CN09_00595	Isochorismatase; Derived by automated computational analysis using gene prediction method: Protein Homology	Spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily	0.884
CN09_00590	CN09_00600	Isochorismatase; Derived by automated computational analysis using gene prediction method: Protein Homology	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.851
CN09_00590	CN09_00605	Isochorismatase; Derived by automated computational analysis using gene prediction method: Protein Homology	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.848
CN09_00590	CN09_00610	Isochorismatase; Derived by automated computational analysis using gene prediction method: Protein Homology	Spermidine/putrescine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.878
CN09_00595	CN09_00585	Spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.742
CN09_00595	CN09_00590	Spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily	Isochorismatase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.884
CN09_00595	CN09_00600	Spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.968
CN09_00595	CN09_00605	Spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.965
CN09_00595	CN09_00610	Spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily	Spermidine/putrescine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.950
CN09_00595	CN09_01065	Spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.719
CN09_00595	CN09_18870	Spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.785
CN09_00595	CN09_23100	Spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.752
CN09_00595	CN09_31485	Spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily	Polyamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.740
CN09_00595	CN09_31955	Spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.743