CN09_00700 protein (Agrobacterium rhizogenes)

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[Homology]

Score

CN09_00700

Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (1088 aa)

Predicted Functional Partners:

CN09_00705

0.975

rplJ

0.950

rpsQ

0.941

rplR

0.941

rplA

0.941

rplO

0.940

rpsN

0.938

rpsD

0.937

rplQ

0.937

rpsH

0.937

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_00700	CN09_00705	CN09_00700	CN09_00705	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.975
CN09_00700	rplA	CN09_00700	CN09_08950	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release	0.941
CN09_00700	rplJ	CN09_00700	CN09_08945	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors	0.950
CN09_00700	rplO	CN09_00700	CN09_08800	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	50S ribosomal protein L15; Binds to the 23S rRNA	0.940
CN09_00700	rplQ	CN09_00700	CN09_08770	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method- Protein Homology	0.937
CN09_00700	rplR	CN09_00700	CN09_08815	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance	0.941
CN09_00700	rpsD	CN09_00700	CN09_06590	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit	0.937
CN09_00700	rpsH	CN09_00700	CN09_08825	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit	0.937
CN09_00700	rpsN	CN09_00700	CN09_08830	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site	0.938
CN09_00700	rpsQ	CN09_00700	CN09_08850	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5’-end of 16S ribosomal RNA	0.941
CN09_00705	CN09_00700	CN09_00705	CN09_00700	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.975
rplA	CN09_00700	CN09_08950	CN09_00700	50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.941
rplA	rplJ	CN09_08950	CN09_08945	50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release	50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors	0.999
rplA	rplO	CN09_08950	CN09_08800	50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release	50S ribosomal protein L15; Binds to the 23S rRNA	0.999
rplA	rplQ	CN09_08950	CN09_08770	50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release	50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
rplA	rplR	CN09_08950	CN09_08815	50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release	50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance	0.999
rplA	rpsD	CN09_08950	CN09_06590	50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release	30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit	0.999
rplA	rpsH	CN09_08950	CN09_08825	50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release	30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit	0.999
rplA	rpsN	CN09_08950	CN09_08830	50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release	30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site	0.999
rplA	rpsQ	CN09_08950	CN09_08850	50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5’-end of 16S ribosomal RNA	0.999

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