node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CN09_00700 | rplA | CN09_00700 | CN09_08950 | Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release | 0.999 |
CN09_00700 | rplB | CN09_00700 | CN09_08880 | Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome | 0.999 |
CN09_00700 | rplC | CN09_00700 | CN09_08895 | Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit | 0.999 |
CN09_00700 | rplD | CN09_00700 | CN09_08890 | Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel | 0.999 |
CN09_00700 | rplO | CN09_00700 | CN09_08800 | Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology | 50S ribosomal protein L15; Binds to the 23S rRNA | 0.999 |
CN09_00700 | rplP | CN09_00700 | CN09_08860 | Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology | Large subunit ribosomal protein l16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs | 0.999 |
CN09_00700 | rplQ | CN09_00700 | CN09_08770 | Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology | 50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.999 |
CN09_00700 | rplV | CN09_00700 | CN09_08870 | Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology | 50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome | 0.999 |
CN09_00700 | rplX | CN09_00700 | CN09_08840 | Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology | 50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit | 0.999 |
CN09_00700 | rpmJ | CN09_00700 | CN09_02055 | Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology | 50S ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family | 0.999 |
rplA | CN09_00700 | CN09_08950 | CN09_00700 | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release | Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.999 |
rplA | rplB | CN09_08950 | CN09_08880 | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome | 0.999 |
rplA | rplC | CN09_08950 | CN09_08895 | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit | 0.999 |
rplA | rplD | CN09_08950 | CN09_08890 | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel | 0.999 |
rplA | rplO | CN09_08950 | CN09_08800 | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release | 50S ribosomal protein L15; Binds to the 23S rRNA | 0.999 |
rplA | rplP | CN09_08950 | CN09_08860 | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release | Large subunit ribosomal protein l16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs | 0.999 |
rplA | rplQ | CN09_08950 | CN09_08770 | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release | 50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.999 |
rplA | rplV | CN09_08950 | CN09_08870 | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release | 50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome | 0.999 |
rplA | rplX | CN09_08950 | CN09_08840 | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release | 50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit | 0.999 |
rplA | rpmJ | CN09_08950 | CN09_02055 | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release | 50S ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family | 0.999 |