CN09_00785 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_00785

Triostin synthetase I; Derived by automated computational analysis using gene prediction method: Protein Homology (550 aa)

Predicted Functional Partners:

CN09_00800

0.997

CN09_00795

0.991

CN09_24995

0.980

CN09_00805

0.973

CN09_00765

0.955

CN09_00760

0.944

CN09_00790

0.905

CN09_00755

0.894

CN09_30450

0.890

CN09_26160

0.874

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

page 1 of 4

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_00755	CN09_00760	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.647
CN09_00755	CN09_00765	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.689
CN09_00755	CN09_00785	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Triostin synthetase I; Derived by automated computational analysis using gene prediction method: Protein Homology	0.894
CN09_00755	CN09_00800	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Antibiotic synthesis protein MbtH; Derived by automated computational analysis using gene prediction method: Protein Homology	0.919
CN09_00755	CN09_00805	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	L-lysine 6-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.612
CN09_00755	CN09_30450	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.407
CN09_00760	CN09_00755	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.647
CN09_00760	CN09_00765	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.911
CN09_00760	CN09_00785	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Triostin synthetase I; Derived by automated computational analysis using gene prediction method: Protein Homology	0.944
CN09_00760	CN09_00790	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.414
CN09_00760	CN09_00800	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Antibiotic synthesis protein MbtH; Derived by automated computational analysis using gene prediction method: Protein Homology	0.921
CN09_00760	CN09_00805	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	L-lysine 6-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.679
CN09_00760	CN09_26160	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Vicibactin biosynthesis non-ribosomal peptide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family	0.956
CN09_00765	CN09_00755	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.689
CN09_00765	CN09_00760	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.911
CN09_00765	CN09_00785	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Triostin synthetase I; Derived by automated computational analysis using gene prediction method: Protein Homology	0.955
CN09_00765	CN09_00790	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.641
CN09_00765	CN09_00795	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.703
CN09_00765	CN09_00800	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Antibiotic synthesis protein MbtH; Derived by automated computational analysis using gene prediction method: Protein Homology	0.923
CN09_00765	CN09_00805	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	L-lysine 6-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.455