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CN09_00805 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_00805" - L-lysine 6-monooxygenase in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
CN09_00805L-lysine 6-monooxygenase; Derived by automated computational analysis using gene prediction method- Protein Homology (456 aa)    
Predicted Functional Partners:
CN09_00785
Triostin synthetase I; Derived by automated computational analysis using gene prediction method- Protein Homology (550 aa)
   
  0.973
CN09_00800
Antibiotic synthesis protein MbtH; Derived by automated computational analysis using gene prediction method- Protein Homology (81 aa)
 
   
  0.960
CN09_20745
Siderophore biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology (382 aa)
   
  0.933
CN09_00795
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (469 aa)
         
  0.828
CN09_00790
Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (285 aa)
              0.821
CN09_00760
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (455 aa)
 
   
  0.679
CN09_00755
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (1363 aa)
 
   
  0.612
CN09_00770
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family (530 aa)
 
   
  0.598
CN09_20800
Esterase; Derived by automated computational analysis using gene prediction method- Protein Homology (300 aa)
   
   
  0.580
CN09_03280
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (398 aa)
   
   
  0.547
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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