CN09_00835 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_00835

Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (288 aa)

Predicted Functional Partners:

CN09_18560

0.999

CN09_00830

0.990

CN09_00825

0.603

CN09_33540

0.495

CN09_03180

0.466

CN09_00615

0.463

CN09_34590

0.452

CN09_00620

0.437

CN09_17165

0.406

CN09_19630

0.404

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

page 1 of 3

Network

Neighborhood

Textmining

Cooccurrence

Experiments

Coexpression

Databases

Fusion

© STRING Consortium 2020

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_00615	CN09_00620	Glycoside hydrolase family 37; Derived by automated computational analysis using gene prediction method- Protein Homology	Carbohydrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.964
CN09_00615	CN09_00830	Glycoside hydrolase family 37; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.523
CN09_00615	CN09_00835	Glycoside hydrolase family 37; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.463
CN09_00615	CN09_03180	Glycoside hydrolase family 37; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.512
CN09_00620	CN09_00615	Carbohydrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Glycoside hydrolase family 37; Derived by automated computational analysis using gene prediction method- Protein Homology	0.964
CN09_00620	CN09_00830	Carbohydrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.489
CN09_00620	CN09_00835	Carbohydrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.437
CN09_00620	CN09_03180	Carbohydrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.485
CN09_00825	CN09_00830	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.603
CN09_00825	CN09_00835	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.603
CN09_00830	CN09_00615	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Glycoside hydrolase family 37; Derived by automated computational analysis using gene prediction method- Protein Homology	0.523
CN09_00830	CN09_00620	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Carbohydrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.489
CN09_00830	CN09_00825	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	0.603
CN09_00830	CN09_00835	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.990
CN09_00830	CN09_03180	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.419
CN09_00830	CN09_18560	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_00835	CN09_00615	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Glycoside hydrolase family 37; Derived by automated computational analysis using gene prediction method- Protein Homology	0.463
CN09_00835	CN09_00620	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Carbohydrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.437
CN09_00835	CN09_00825	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	0.603
CN09_00835	CN09_00830	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.990