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CN09_00835 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_00835" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_00835Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (288 aa)    
Predicted Functional Partners:
CN09_18560
Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (1702 aa)
 
          0.999
CN09_00830
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (272 aa)
 
     
  0.990
CN09_00825
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+ (104 aa)
              0.603
CN09_33540
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (400 aa)
              0.495
CN09_03180
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (111 aa)
   
          0.466
CN09_00615
Glycoside hydrolase family 37; Derived by automated computational analysis using gene prediction method- Protein Homology (751 aa)
   
          0.463
CN09_34590
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (205 aa)
 
     
  0.452
CN09_00620
Carbohydrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (894 aa)
   
          0.437
CN09_17165
ATPase AAA; Derived by automated computational analysis using gene prediction method- Protein Homology (417 aa)
 
          0.406
CN09_19630
ArdC antirestriction protein; Derived by automated computational analysis using gene prediction method- Protein Homology (309 aa)
 
          0.404
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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