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CN09_00880 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_00880" - ABC transporter substrate-binding protein in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_00880ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (375 aa)    
Predicted Functional Partners:
CN09_00875
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family (376 aa)
 
   
  0.986
CN09_00870
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family (308 aa)
 
   
  0.985
CN09_00855
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (516 aa)
 
   
  0.937
CN09_00865
Cysteine hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (225 aa)
 
          0.925
CN09_00850
Cysteine hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (222 aa)
 
          0.913
CN09_00845
Allophanate hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (116 aa)
 
          0.851
CN09_00840
Catalyzes the hydrolysis of allophanate; Derived by automated computational analysis using gene prediction method- Protein Homology (599 aa)
 
          0.775
CN09_00860
Cyanuric acid amidohydrolase; Responsible for the hydrolysis of cyanuric acid, an intermediate formed during catabolism of s-triazine based compounds in herbicides such as atrazine and polymers such as melamine. Catalyzes the hydrolytic opening of the s-triazine ring of cyanuric acid (2,4,6-trihydroxy-s-triazine) to yield carbon dioxide and carboxybiuret, which spontaneously decarboxylates to biuret; Belongs to the cyclic amide hydrolase (CyAH) family (351 aa)
 
          0.774
CN09_07615
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family (364 aa)
 
   
  0.769
CN09_07610
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family (306 aa)
 
   
  0.757
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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