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CN09_00920 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_00920" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_00920Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (72 aa)    
Predicted Functional Partners:
CN09_00915
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (652 aa)
 
          0.943
CN09_00935
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (399 aa)
 
          0.669
CN09_18865
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+ (202 aa)
   
          0.656
CN09_16740
Thioesterase; Derived by automated computational analysis using gene prediction method- Protein Homology (133 aa)
   
          0.651
CN09_28845
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (396 aa)
 
          0.650
CN09_13590
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (64 aa)
   
          0.650
CN09_13855
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (205 aa)
   
          0.648
CN09_21310
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (65 aa)
   
          0.594
CN09_30585
Regulatory protein; Derived by automated computational analysis using gene prediction method- Protein Homology (786 aa)
   
          0.590
CN09_10285
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (86 aa)
   
          0.566
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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