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CN09_00975 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_00975" - ABC transporter substrate-binding protein in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
CN09_00975ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (542 aa)    
Predicted Functional Partners:
CN09_00970
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (329 aa)
 
 
  0.926
CN09_00965
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (309 aa)
 
   
  0.921
CN09_21515
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (321 aa)
 
 
  0.837
CN09_21520
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (319 aa)
 
   
  0.824
CN09_00960
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (573 aa)
   
   
  0.623
CN09_00980
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (293 aa)
              0.555
CN09_00990
Amino acid oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology (426 aa)
              0.551
CN09_00985
N-formylglutamate amidohydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (276 aa)
              0.537
CN09_21535
Methionine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (334 aa)
 
 
 
  0.503
CN09_00995
Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the aldehyde dehydrogenase family (477 aa)
              0.495
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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