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CN09_01110 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_01110" - Transcriptional regulator in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
CN09_01110Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (309 aa)    
Predicted Functional Partners:
CN09_18510
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (303 aa)
   
          0.608
CN09_18490
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (296 aa)
   
          0.605
CN09_31800
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (289 aa)
   
          0.598
CN09_13990
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (312 aa)
   
          0.588
CN09_18475
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (297 aa)
   
          0.587
CN09_01115
Monooxygenase; Derived by automated computational analysis using gene prediction method- Protein Homology (444 aa)
              0.586
CN09_29495
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (312 aa)
   
          0.548
CN09_07205
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (303 aa)
   
          0.541
CN09_01825
Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology (1574 aa)
         
  0.472
CN09_32330
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (299 aa)
   
          0.405
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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