STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_01120Fatty acid desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology (308 aa)    
Predicted Functional Partners:
rnr
3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs
   
 
  0.962
CN09_18560
Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
  0.960
CN09_09380
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology
    
  0.952
CN09_04795
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology
    
 0.951
CN09_04915
ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
    
 0.951
CN09_27360
3-demethylubiquinone-9 3-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology
    
 0.951
CN09_32755
SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology
    
 0.951
CN09_02850
SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology
    
 0.949
CN09_03365
Ubiquinone biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology
    
 0.949
CN09_04940
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology
    
 0.949
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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