STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_01125Phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology (269 aa)    
Predicted Functional Partners:
CN09_01120
Fatty acid desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.946
CN09_30585
Regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.724
phnC
Phosphonates import ATP-binding protein PhnC; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family
 
  
 0.495
CN09_00100
Histidine ammonia-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.463
CN09_25785
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.436
CN09_13070
Phosphonate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.435
CN09_00620
Carbohydrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.434
CN09_00615
Glycoside hydrolase family 37; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.430
CN09_13075
Phosphonate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.425
CN09_13110
Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1-methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose
  
  
 0.423
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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