STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_01135Cell division protein Fic; Derived by automated computational analysis using gene prediction method: Protein Homology (198 aa)    
Predicted Functional Partners:
CN09_01140
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.989
CN09_18560
Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
    0.866
CN09_03380
2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.851
CN09_20065
Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology
   
    0.785
CN09_20075
SpoVR family protein; Derived by automated computational analysis using gene prediction method: Protein Homology
   
    0.773
CN09_20070
UPF0229 protein CN09_20070; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0229 family
   
    0.772
CN09_14315
Trehalose 6-phosphate phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose
   
    0.770
CN09_17075
XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.703
CN09_11435
DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology
   
   0.672
CN09_22745
Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.671
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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