STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_01240IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology (264 aa)    
Predicted Functional Partners:
CN09_01235
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.891
CN09_01225
Acyl-coa transferase; Belongs to the CoA-transferase III family
 
   
 0.792
CN09_01230
Amine oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.771
CN09_01245
Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
   0.732
CN09_01270
Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.674
CN09_01290
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
   0.657
CN09_01280
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.637
CN09_01265
Belongs to the mandelate racemase/muconate lactonizing enzyme family
 
   
 0.633
CN09_01295
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.625
CN09_16390
IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.620
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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