STRINGSTRING
CN09_01440 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_01440" - ABC transporter permease in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_01440ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family (337 aa)    
Predicted Functional Partners:
CN09_01445
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (315 aa)
 
     
  0.975
CN09_01435
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (507 aa)
   
  0.949
CN09_01430
LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (341 aa)
 
   
  0.857
CN09_30845
D-ribose transporter ATP-binding protein; With RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; Derived by automated computational analysis using gene prediction method- Protein Homology (492 aa)
   
  0.739
CN09_18655
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (356 aa)
 
     
  0.723
CN09_32915
Ribose import ATP-binding protein RbsA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family (514 aa)
   
  0.717
xylA
Xylose isomerase; Catalyzes the interconversion of D-xylose to D-xylulose; Derived by automated computational analysis using gene prediction method- Protein Homology (436 aa)
              0.698
CN09_22120
D-ribose transporter ATP-binding protein; With RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; Derived by automated computational analysis using gene prediction method- Protein Homology (506 aa)
   
  0.689
CN09_20960
Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (309 aa)
   
  0.688
CN09_22115
LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (328 aa)
   
  0.672
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (9%) [HD]