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CN09_01530 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_01530" - Acetyltransferase in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_01530Acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (196 aa)    
Predicted Functional Partners:
CN09_10375
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5’-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5’-phosphate; In the C-terminal section; belongs to the HTP reductase family (369 aa)
   
        0.784
CN09_01525
Ornithine decarboxylase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the Orn/Lys/Arg decarboxylase class-II family (377 aa)
              0.745
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (1000 aa)
              0.704
CN09_02970
Histidine phosphotransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (215 aa)
   
          0.566
CN09_27410
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (170 aa)
 
          0.508
CN09_27510
Cell division protein FtsX; Derived by automated computational analysis using gene prediction method- Protein Homology (348 aa)
 
          0.490
CN09_14700
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (86 aa)
   
          0.486
CN09_01180
CysZ-like protein; Role in sulfur assimilation; Derived by automated computational analysis using gene prediction method- Protein Homology (237 aa)
   
          0.466
CN09_17055
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (165 aa)
   
          0.424
CN09_02965
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (196 aa)
 
          0.407
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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