CN09_01540 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_01540

Derived by automated computational analysis using gene prediction method: Protein Homology (542 aa)

Predicted Functional Partners:

CN09_01535

0.972

CN09_16265

0.639

CN09_16260

0.547

CN09_02425

0.530

CN09_02430

0.498

CN09_01555

0.448

CN09_01545

0.441

CN09_30360

0.436

CN09_07185

0.434

CN09_01550

0.426

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

page 1 of 3

Network

Neighborhood

Textmining

Cooccurrence

Experiments

Fusion

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_01535	CN09_01540	Cytochrome C peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology	Derived by automated computational analysis using gene prediction method: Protein Homology	0.972
CN09_01535	CN09_01545	Cytochrome C peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology	Serine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.435
CN09_01535	CN09_01550	Cytochrome C peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.422
CN09_01535	CN09_01555	Cytochrome C peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology	Cobalamin biosynthesis protein CobW; Derived by automated computational analysis using gene prediction method: Protein Homology	0.441
CN09_01540	CN09_01535	Derived by automated computational analysis using gene prediction method: Protein Homology	Cytochrome C peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.972
CN09_01540	CN09_01545	Derived by automated computational analysis using gene prediction method: Protein Homology	Serine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.441
CN09_01540	CN09_01550	Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.426
CN09_01540	CN09_01555	Derived by automated computational analysis using gene prediction method: Protein Homology	Cobalamin biosynthesis protein CobW; Derived by automated computational analysis using gene prediction method: Protein Homology	0.448
CN09_01540	CN09_02425	Derived by automated computational analysis using gene prediction method: Protein Homology	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.530
CN09_01540	CN09_02430	Derived by automated computational analysis using gene prediction method: Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.498
CN09_01540	CN09_07185	Derived by automated computational analysis using gene prediction method: Protein Homology	Nickel/cobalt efflux system; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NiCoT transporter (TC 2.A.52) family	0.434
CN09_01540	CN09_16260	Derived by automated computational analysis using gene prediction method: Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.547
CN09_01540	CN09_16265	Derived by automated computational analysis using gene prediction method: Protein Homology	Sodium:solute symporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family	0.639
CN09_01540	CN09_30360	Derived by automated computational analysis using gene prediction method: Protein Homology	3-beta hydroxysteroid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.436
CN09_01545	CN09_01535	Serine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	Cytochrome C peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.435
CN09_01545	CN09_01540	Serine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	Derived by automated computational analysis using gene prediction method: Protein Homology	0.441
CN09_01545	CN09_01550	Serine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.820
CN09_01545	CN09_01555	Serine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	Cobalamin biosynthesis protein CobW; Derived by automated computational analysis using gene prediction method: Protein Homology	0.819
CN09_01550	CN09_01535	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Cytochrome C peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.422
CN09_01550	CN09_01540	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Derived by automated computational analysis using gene prediction method: Protein Homology	0.426