STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_01555Cobalamin biosynthesis protein CobW; Derived by automated computational analysis using gene prediction method: Protein Homology (365 aa)    
Predicted Functional Partners:
CN09_01550
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.948
CN09_01545
Serine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.819
CN09_05700
Drug:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.801
CN09_23625
Precorrin-6Y methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.764
CN09_01560
Creatininase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.724
CN09_01540
Derived by automated computational analysis using gene prediction method: Protein Homology
       0.448
CN09_01535
Cytochrome C peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.441
CN09_01565
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.405
macB
Macrolide export ATP-binding/permease protein MacB; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides
  
  
 0.401
CN09_14555
SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the methyltransferase superfamily
 
    0.400
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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