CN09_01560 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_01560

Creatininase; Derived by automated computational analysis using gene prediction method- Protein Homology (263 aa)

Predicted Functional Partners:

CN09_22360

0.817

CN09_31455

0.724

CN09_01555

0.724

CN09_01550

0.712

CN09_01565

0.647

CN09_02870

0.612

CN09_02875

0.566

CN09_01545

0.521

CN09_01080

0.516

CN09_01570

0.490

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

page 1 of 3

Network

Neighborhood

Textmining

Fusion

Experiments

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_01080	CN09_01560	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Creatininase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.516
CN09_01080	CN09_02870	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	FAD-linked oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.647
CN09_01080	CN09_02875	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Cytosine deaminase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.726
CN09_01545	CN09_01550	Serine acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.820
CN09_01545	CN09_01555	Serine acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Cobalamin biosynthesis protein CobW; Derived by automated computational analysis using gene prediction method- Protein Homology	0.819
CN09_01545	CN09_01560	Serine acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Creatininase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.521
CN09_01545	CN09_01565	Serine acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.401
CN09_01550	CN09_01545	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Serine acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.820
CN09_01550	CN09_01555	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Cobalamin biosynthesis protein CobW; Derived by automated computational analysis using gene prediction method- Protein Homology	0.948
CN09_01550	CN09_01560	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Creatininase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.712
CN09_01550	CN09_01565	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.413
CN09_01550	CN09_01570	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.446
CN09_01555	CN09_01545	Cobalamin biosynthesis protein CobW; Derived by automated computational analysis using gene prediction method- Protein Homology	Serine acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.819
CN09_01555	CN09_01550	Cobalamin biosynthesis protein CobW; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.948
CN09_01555	CN09_01560	Cobalamin biosynthesis protein CobW; Derived by automated computational analysis using gene prediction method- Protein Homology	Creatininase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.724
CN09_01555	CN09_01565	Cobalamin biosynthesis protein CobW; Derived by automated computational analysis using gene prediction method- Protein Homology	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.405
CN09_01560	CN09_01080	Creatininase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.516
CN09_01560	CN09_01545	Creatininase; Derived by automated computational analysis using gene prediction method- Protein Homology	Serine acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.521
CN09_01560	CN09_01550	Creatininase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.712
CN09_01560	CN09_01555	Creatininase; Derived by automated computational analysis using gene prediction method- Protein Homology	Cobalamin biosynthesis protein CobW; Derived by automated computational analysis using gene prediction method- Protein Homology	0.724