STRINGSTRING
CN09_01610 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_01610" - NAD(P) transhydrogenase subunit beta in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_01610NAD(P) transhydrogenase subunit beta; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane (464 aa)    
Predicted Functional Partners:
CN09_01600
NAD(P) transhydrogenase subunit alpha; Derived by automated computational analysis using gene prediction method- Protein Homology (390 aa)
 
  0.999
CN09_01605
NAD(P) transhydrogenase subunit alpha; Derived by automated computational analysis using gene prediction method- Protein Homology (132 aa)
 
  0.999
CN09_01595
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (74 aa)
              0.817
CN09_01925
Oligoendopeptidase F; Derived by automated computational analysis using gene prediction method- Protein Homology (618 aa)
              0.731
CN09_08330
Deoxyguanosinetriphosphate triphosphohydrolase-like protein; dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; Derived by automated computational analysis using gene prediction method- Protein Homology (405 aa)
              0.709
rpmJ
50S ribosomal protein L36; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the bacterial ribosomal protein bL36 family (41 aa)
              0.652
CN09_08485
Alanine dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the AlaDH/PNT family (372 aa)
     
  0.637
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway (321 aa)
         
  0.630
CN09_22620
4-hydroxybutyrate CoA-transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (455 aa)
              0.616
CN09_27415
MFS transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (185 aa)
              0.615
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (4%) [HD]