CN09_01620 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_01620

D-amino acid oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology (360 aa)

Predicted Functional Partners:

prfC

0.722

CN09_01625

0.592

CN09_19005

0.582

CN09_01655

0.551

CN09_19010

0.536

CN09_18090

0.474

CN09_10375

0.445

CN09_01615

0.442

CN09_23555

0.433

CN09_31870

0.422

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_01615	CN09_01620	CN09_01615	CN09_01620	Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology	D-amino acid oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.442
CN09_01620	CN09_01615	CN09_01620	CN09_01615	D-amino acid oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology	Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.442
CN09_01620	CN09_01625	CN09_01620	CN09_01625	D-amino acid oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology	GlcNAc transferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.592
CN09_01620	CN09_01655	CN09_01620	CN09_01655	D-amino acid oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology	Sarcosine oxidase subunit alpha; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the GcvT family	0.551
CN09_01620	CN09_10375	CN09_01620	CN09_10375	D-amino acid oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology	Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5’-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5’-phosphate; In the C-terminal section; belongs to the HTP reductase family	0.445
CN09_01620	CN09_18090	CN09_01620	CN09_18090	D-amino acid oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.474
CN09_01620	CN09_19005	CN09_01620	CN09_19005	D-amino acid oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.582
CN09_01620	CN09_19010	CN09_01620	CN09_19010	D-amino acid oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology	Sarcosine oxidase subunit beta; Derived by automated computational analysis using gene prediction method- Protein Homology	0.536
CN09_01620	CN09_23555	CN09_01620	CN09_23555	D-amino acid oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology	Ferredoxin; Derived by automated computational analysis using gene prediction method- Protein Homology	0.433
CN09_01620	CN09_31870	CN09_01620	CN09_31870	D-amino acid oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.422
CN09_01620	prfC	CN09_01620	CN09_14250	D-amino acid oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP	0.722
CN09_01625	CN09_01620	CN09_01625	CN09_01620	GlcNAc transferase; Derived by automated computational analysis using gene prediction method- Protein Homology	D-amino acid oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.592
CN09_01655	CN09_01620	CN09_01655	CN09_01620	Sarcosine oxidase subunit alpha; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the GcvT family	D-amino acid oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.551
CN09_01655	CN09_10375	CN09_01655	CN09_10375	Sarcosine oxidase subunit alpha; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the GcvT family	Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5’-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5’-phosphate; In the C-terminal section; belongs to the HTP reductase family	0.416
CN09_01655	CN09_19010	CN09_01655	CN09_19010	Sarcosine oxidase subunit alpha; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the GcvT family	Sarcosine oxidase subunit beta; Derived by automated computational analysis using gene prediction method- Protein Homology	0.578
CN09_01655	CN09_23555	CN09_01655	CN09_23555	Sarcosine oxidase subunit alpha; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the GcvT family	Ferredoxin; Derived by automated computational analysis using gene prediction method- Protein Homology	0.921
CN09_10375	CN09_01620	CN09_10375	CN09_01620	Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5’-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5’-phosphate; In the C-terminal section; belongs to the HTP reductase family	D-amino acid oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.445
CN09_10375	CN09_01655	CN09_10375	CN09_01655	Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5’-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5’-phosphate; In the C-terminal section; belongs to the HTP reductase family	Sarcosine oxidase subunit alpha; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the GcvT family	0.416
CN09_10375	CN09_23555	CN09_10375	CN09_23555	Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5’-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5’-phosphate; In the C-terminal section; belongs to the HTP reductase family	Ferredoxin; Derived by automated computational analysis using gene prediction method- Protein Homology	0.867
CN09_18090	CN09_01620	CN09_18090	CN09_01620	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	D-amino acid oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.474

page 1 of 2

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About