STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_01620D-amino acid oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology (360 aa)    
Predicted Functional Partners:
prfC
Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
       0.722
CN09_01625
GlcNAc transferase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.592
CN09_19005
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.582
CN09_01655
Sarcosine oxidase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GcvT family
 
 
 0.551
CN09_19010
Sarcosine oxidase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.536
CN09_18090
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.474
CN09_10375
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate; In the C-terminal section; belongs to the HTP reductase family
 
 
   0.445
CN09_01615
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.442
CN09_23555
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
 
0.433
CN09_31870
(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
 0.422
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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