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CN09_01735 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_01735" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_01735Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (157 aa)    
Predicted Functional Partners:
CN09_03240
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (134 aa)
   
          0.774
CN09_12955
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (221 aa)
   
          0.730
CN09_16135
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (182 aa)
   
          0.715
CN09_15055
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (396 aa)
   
          0.706
CN09_14780
Calcium-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (211 aa)
   
          0.693
CN09_12400
Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (83 aa)
   
          0.693
CN09_03280
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (398 aa)
   
          0.679
CN09_06640
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (410 aa)
   
          0.654
CN09_03245
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (117 aa)
   
          0.652
CN09_11615
Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method- Protein Homology (133 aa)
   
          0.651
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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