STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_01770Lysophospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology (324 aa)    
Predicted Functional Partners:
CN09_07075
Patatin; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.853
CN09_16295
Patatin; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.853
CN09_01800
Molecular chaperone; Belongs to the small heat shock protein (HSP20) family
 
   
 0.824
CN09_29405
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.810
CN09_02050
Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
   0.808
CN09_03380
2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.772
CN09_13490
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.766
CN09_29400
RNA-binding protein S4; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.753
CN09_29395
Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
       0.740
cpaB
Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.713
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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