STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_01960Cu resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology (122 aa)    
Predicted Functional Partners:
nnrD
Multifunctional fusion protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration; Belongs to the NnrD/CARKD family
       0.999
CN09_34345
Copper resistance protein CopD; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 0.974
CN09_12525
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
    0.747
CN09_10470
Copper oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.740
CN09_01965
Photosynthetic protein synthase I; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.671
CN09_01980
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.669
CN09_21850
Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.655
CN09_01975
Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.582
CN09_01535
Cytochrome C peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.557
thrS
Threonine--tRNA ligase; Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
       0.477
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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