STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_01975Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology (192 aa)    
Predicted Functional Partners:
ispDF
Bifunctional enzyme IspD/IspF; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF)
       0.975
CN09_01965
Photosynthetic protein synthase I; Derived by automated computational analysis using gene prediction method: Protein Homology
     0.939
CN09_01980
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.895
CN09_01970
Ubiquinol oxidase subunit 2; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.866
CN09_23625
Precorrin-6Y methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.844
CN09_05130
Copper chaperone; Derived by automated computational analysis using gene prediction method: Protein Homology
     0.826
CN09_03380
2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.692
CN09_01960
Cu resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.582
CN09_01985
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.509
CN09_27465
Sodium:dicarboxylate symporter; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
   0.410
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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