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CN09_01980 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_01980" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_01980Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (457 aa)    
Predicted Functional Partners:
CN09_01975
Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology (192 aa)
              0.895
CN09_23625
Precorrin-6Y methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (408 aa)
              0.850
CN09_01970
Ubiquinol oxidase subunit 2; Derived by automated computational analysis using gene prediction method- Protein Homology (374 aa)
              0.848
CN09_01965
Photosynthetic protein synthase I; Derived by automated computational analysis using gene prediction method- Protein Homology (197 aa)
              0.729
guaB
Inosine-5’-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5’-phosphate (IMP) to xanthosine 5’-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth; Belongs to the IMPDH/GMPR family (494 aa)
              0.715
CN09_05130
Copper chaperone; Derived by automated computational analysis using gene prediction method- Protein Homology (200 aa)
              0.707
CN09_03975
Cation transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (740 aa)
   
   
  0.681
CN09_01960
Cu resistance protein; Derived by automated computational analysis using gene prediction method- Protein Homology (122 aa)
              0.669
CN09_26800
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (343 aa)
 
        0.590
CN09_01985
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (139 aa)
 
          0.546
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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