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CN09_01985 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_01985" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_01985Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (139 aa)    
Predicted Functional Partners:
CN09_08560
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (105 aa)
   
          0.664
CN09_04730
Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology (502 aa)
   
          0.661
CN09_04725
Polysaccharide biosynthesis protein GumK; Derived by automated computational analysis using gene prediction method- Protein Homology (403 aa)
   
          0.610
CN09_24080
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (98 aa)
   
          0.598
CN09_20915
Sugar kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (352 aa)
   
          0.553
CN09_01980
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (457 aa)
 
          0.546
CN09_27695
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (88 aa)
   
          0.542
CN09_09725
Acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (169 aa)
   
          0.538
CN09_10760
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (327 aa)
   
          0.522
CN09_30535
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (187 aa)
   
          0.514
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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