CN09_02025 protein (Agrobacterium rhizogenes)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

CN09_02025

Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology (190 aa)

Predicted Functional Partners:

CN09_02035

0.933

CN09_02030

0.878

CN09_02040

0.769

CN09_15965

0.655

CN09_02020

0.635

CN09_12955

0.565

CN09_02665

0.530

CN09_16135

0.526

CN09_14545

0.519

CN09_15955

0.499

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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node1	node2	node1 annotation	node2 annotation	score
CN09_02020	CN09_02025	Threonine ammonia-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.635
CN09_02020	CN09_02030	Threonine ammonia-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology	Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology	0.638
CN09_02020	CN09_02035	Threonine ammonia-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology	Decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.635
CN09_02020	CN09_02040	Threonine ammonia-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology	LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.452
CN09_02025	CN09_02020	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Threonine ammonia-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.635
CN09_02025	CN09_02030	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology	0.878
CN09_02025	CN09_02035	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.933
CN09_02025	CN09_02040	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.769
CN09_02025	CN09_02665	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.530
CN09_02025	CN09_12955	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.565
CN09_02025	CN09_14545	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.519
CN09_02025	CN09_15955	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.499
CN09_02025	CN09_15965	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Transmembrane transcriptional regulator (Anti-sigma factor); Derived by automated computational analysis using gene prediction method: Protein Homology	0.655
CN09_02025	CN09_16135	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.526
CN09_02030	CN09_02020	Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology	Threonine ammonia-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.638
CN09_02030	CN09_02025	Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.878
CN09_02030	CN09_02035	Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology	Decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.862
CN09_02030	CN09_02040	Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology	LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.611
CN09_02035	CN09_02020	Decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology	Threonine ammonia-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.635
CN09_02035	CN09_02025	Decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.933