STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_02035Decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology (129 aa)    
Predicted Functional Partners:
CN09_02025
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.933
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
     
 0.884
CN09_02040
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.883
CN09_02030
Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.862
CN09_03985
Anthranilate synthase; trpE(G); catalyzes the formation of anthranilate from chorismate and glutamine; contains both component I and II; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.781
CN09_02020
Threonine ammonia-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.635
CN09_23555
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.546
CN09_14545
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.488
CN09_15965
Transmembrane transcriptional regulator (Anti-sigma factor); Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.479
CN09_33190
4-carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology
   
 0.463
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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