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CN09_02050 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_02050" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_02050Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (209 aa)    
Predicted Functional Partners:
CN09_02045
Esterase; Derived by automated computational analysis using gene prediction method- Protein Homology (350 aa)
 
 
 
  0.908
rpmJ
50S ribosomal protein L36; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the bacterial ribosomal protein bL36 family (41 aa)
              0.870
CN09_29405
Helicase; Derived by automated computational analysis using gene prediction method- Protein Homology (1053 aa)
 
   
  0.807
CN09_01770
Lysophospholipase; Derived by automated computational analysis using gene prediction method- Protein Homology (324 aa)
 
 
      0.803
CN09_29400
RNA-binding protein S4; Derived by automated computational analysis using gene prediction method- Protein Homology (134 aa)
              0.744
CN09_29395
Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions (112 aa)
              0.744
CN09_17045
2-haloalkanoic acid dehalogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (204 aa)
              0.744
CN09_27485
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (919 aa)
 
          0.733
CN09_10895
Putative SOS response-associated peptidase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the SOS response-associated peptidase family (254 aa)
              0.729
CN09_28190
Acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method- Protein Homology (216 aa)
              0.719
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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