STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_02100RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily (194 aa)    
Predicted Functional Partners:
CN09_02105
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.965
CN09_18125
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.856
CN09_18095
DoxX family protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.736
CN09_18105
UPF0276 protein CN09_18105; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0276 family
 
   
 0.658
CN09_18110
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.654
CN09_18115
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.620
CN09_18100
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.604
CN09_02095
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.577
ispDF
Bifunctional enzyme IspD/IspF; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF)
       0.528
CN09_02110
Inositol-1-monophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the inositol monophosphatase superfamily
       0.489
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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