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CN09_02270 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_02270" - AcvB in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_02270AcvB; Derived by automated computational analysis using gene prediction method- Protein Homology (465 aa)    
Predicted Functional Partners:
CN09_02265
Lysyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method- Protein Homology (869 aa)
 
   
  0.999
CN09_10530
Dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family (718 aa)
         
  0.813
CN09_10375
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5’-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5’-phosphate; In the C-terminal section; belongs to the HTP reductase family (369 aa)
              0.692
CN09_08745
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (69 aa)
   
          0.494
CN09_02275
Glycerol-3-phosphatase; Derived by automated computational analysis using gene prediction method- Protein Homology (225 aa)
              0.492
CN09_11635
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (112 aa)
              0.474
CN09_34015
Peptide-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (306 aa)
   
          0.456
CN09_08755
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (158 aa)
   
          0.445
CN09_11680
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (319 aa)
 
     
  0.436
CN09_08590
Phosphoglycolate phosphatase; Derived by automated computational analysis using gene prediction method- Protein Homology (217 aa)
              0.434
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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