STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_02275Glycerol-3-phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology (225 aa)    
Predicted Functional Partners:
CN09_03065
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology
   
   0.751
metH
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate
       0.730
guaA
Gmp synthase; Catalyzes the synthesis of GMP from XMP
  
  
 0.703
CN09_02280
Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
  
    0.659
CN09_11125
Hypothetical protein; Phage-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology
   
   0.625
CN09_02285
Metallophosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.584
CN09_17085
Pyruvate phosphate dikinase; Belongs to the PEP-utilizing enzyme family
       0.572
mprF
Lysyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.570
CN09_02270
AcvB; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.493
secF
Preprotein translocase subunit secd/secf; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
     
 0.452
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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